PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G15200.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 214aa    MW: 24047.4 Da    PI: 5.2309
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G15200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.82e-31111371128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lp Gf+F+Ptd++lvv+yL+++v g+++ +  ++  +d+  ++Pw++p +   ++k+wyfF+k+d+  +      r++ sg Wk+tg++k+++++  
  OB10G15200.1  11 LPLGFKFQPTDQQLVVDYLQRRVVGESCII-PTVVGLDMEGFDPWHIPGMPLYGDKKWYFFIKTDHVDR---TCVRMAPSGSWKTTGTNKTIFVTga 103
                   699************************888.66999************65556899********99876...46788899*************9866 PP

           NAM  96 kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                   +g  + +k+ +vfy g  + +++kt+W+mhey l
  OB10G15200.1 104 QGVPTAVKRAFVFYLGqPSLETNKTSWIMHEYCL 137
                   67779*********883456889*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-394153IPR003441NAC domain
PROSITE profilePS5100538.48311153IPR003441NAC domain
PfamPF023652.3E-2012137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAMMPQLTLT LPLGFKFQPT DQQLVVDYLQ RRVVGESCII PTVVGLDMEG FDPWHIPGMP  60
LYGDKKWYFF IKTDHVDRTC VRMAPSGSWK TTGTNKTIFV TGAQGVPTAV KRAFVFYLGQ  120
PSLETNKTSW IMHEYCLTNP STEEIVLCKI SNKNQHELRA GLYDVAYNLI IHFEPLAMEH  180
PNHVSGIDAT AATDDLGDLD EENVSNNTTT TNNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-32515411166NO APICAL MERISTEM PROTEIN
1ut4_B1e-32515411166NO APICAL MERISTEM PROTEIN
1ut7_A1e-32515411166NO APICAL MERISTEM PROTEIN
1ut7_B1e-32515411166NO APICAL MERISTEM PROTEIN
4dul_A1e-32515411166NAC domain-containing protein 19
4dul_B1e-32515411166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G15200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.11e-58NAC domain-containing protein 48-like
TrEMBLJ3N1X21e-161J3N1X2_ORYBR; Uncharacterized protein
STRINGOB10G15200.11e-161(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-34NAC family protein