PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G16200.1
Common NameLOC102702498
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 322aa    MW: 34179.6 Da    PI: 7.612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G16200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.5e-15123174155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  OB10G16200.1 123 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 174
                   79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.56E-15121178No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14122178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17122187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.336122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-12123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MALEAVVYSH GGHFGGYGLM ASGGPAAAAA WCCDGGVFAA GGGSGGEPCG GSWDDPLLAA  60
SLDVLGVEDE WEVEVEQRAS SSSSSSKVAA AAAEVGEAPP AKAAKRKRRR AKAVKNREEI  120
ENQRMTHIAV ERNRRRQMNE YLAVLRSLMP PSYAQRGDQA SIVGGAINYV RELEQLLQAL  180
EVKKSIKKQG DGGGGESPSP FSGFFTFPQY STSGGHRGDA VRRFGKPAEG AAIADIEASM  240
VEGHAGVKVQ ARRRPRQLLR LVAGLHQLGL TTLHLNVTTA KAMAMYSFSL KVEDGCKLGS  300
VEEIGTAVHE ILERIQEEQA FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KRKRRR
2105109RKRRR
3123134RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G16200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588091e-112AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697296.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T44e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLJ3N2720.0J3N272_ORYBR; Uncharacterized protein
STRINGOB10G16200.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]