PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G17040.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 172aa    MW: 19200.6 Da    PI: 7.5084
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G17040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA76.93.8e-2467123158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   dep+YVN+KQy++Il+RR++R+ l +e+k+ ++ rk++l eSR+k+A+ R+Rg+gGrF
  OB10G17040.1  67 DEPIYVNPKQYHAILRRRERRKILGSEDKV-AAIRKRILLESRQKQAKLRRRGNGGRF 123
                   79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-1865126IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115223.70266126IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.0E-1868123IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-136991IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-13100123IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGVGQTSQEN QSNLDGVGQV STDLSLACLE ANNVRPKPEH SQPLKHMCAI GLERTQQLPL  60
PTEHIDDEPI YVNPKQYHAI LRRRERRKIL GSEDKVAAIR KRILLESRQK QAKLRRRGNG  120
GRFISIEHPP EPCVDDQLSE NGESISACPS TVSENSSNLN AFTGDELSLI RQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-1467136271NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G17040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697306.11e-119PREDICTED: nuclear transcription factor Y subunit alpha-like
TrEMBLJ3N2F61e-123J3N2F6_ORYBR; Uncharacterized protein
STRINGOB10G17040.11e-124(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174681010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.12e-19nuclear factor Y, subunit A5