PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G17210.1
Common NameLOC102710731
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 89aa    MW: 9914.24 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G17210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.5e-0613561454
                  HHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS
           HLH 14 driNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54
                  d+i + +++L++llP +s   +a+++    a  L++++ YI+sL
  OB10G17210.1 13 DEITELISKLQSLLPDSSrrrGATGRPSPAAKLLKETCSYIQSL 56
                  67999***********888*888888899*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-71377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-71380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSGRRASGRI TDDEITELIS KLQSLLPDSS RRRGATGRPS PAAKLLKETC SYIQSLHREV  60
DDLSERLSEL MATMDSNSPQ ADIIRTLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G17210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8379421e-105CT837942.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015N03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661756.14e-57PREDICTED: transcription factor ILI3-like
SwissprotA2XD152e-30ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R472e-30ILI3_ORYSJ; Transcription factor ILI3
TrEMBLJ3N2H39e-56J3N2H3_ORYBR; Uncharacterized protein
STRINGOB10G17210.12e-56(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-26bHLH family protein