PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB10G17260.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 242aa MW: 27453 Da PI: 7.0433

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB10G17260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.3	5.4e-08	2	19	39	56
S-HHHHHHHHHHHHHHHH CS Homeobox 39 LterqVkvWFqNrRakek 56 + rqV +WFqNrRa++k OB10G17260.1 2 IAPRQVAIWFQNRRARWK 19 5689*************9 PP
2	HD-ZIP_I/II	71.3	2e-23	2	56	38	92
HD-ZIP_I/II 38 lqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 + prqva+WFqnrRAR+ktkqlEkd++aL+r++da ++en++L + +++L++e+ OB10G17260.1 2 IAPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARSENDALLALNSKLHAEIV 56 68*************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.495	1	21	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.3E-8	3	28	IPR009057	Homeodomain-like
Pfam	PF00046	2.7E-5	3	19	IPR001356	Homeobox domain
CDD	cd00086	5.21E-5	4	22	No hit	No description
SuperFamily	SSF46689	6.84E-7	4	30	IPR009057	Homeodomain-like
Pfam	PF02183	3.8E-10	21	60	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MIAPRQVAIW FQNRRARWKT KQLEKDFDAL RRQLDAARSE NDALLALNSK LHAEIVALKG 60 GAAAGGGGGG SSCRQEAASE LINLNVKETE ASCSNRSENS SEINLDISRT PPXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXFGGL LCGAVDEQPP FWPWADGHHH 240 FH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	21	RRARWKTKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB10G17260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287700	1e-150	AK287700.1 Oryza sativa Japonica Group cDNA, clone: J065130H05, full insert sequence.
GenBank	CT837749	1e-150	CT837749.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA049M06, full insert sequence.
GenBank	EU085431	1e-150	EU085431.1 Oryza sativa Indica Group homeodomain-leucine zipper transcription factor (hox23) mRNA, partial cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	2e-32	HD-ZIP family protein