PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G17330.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 230aa    MW: 25136.7 Da    PI: 6.3035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G17330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.51.4e-071967255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +y+GV  +  +grW  ++      +    r+ +g++gt+eeAa a+++a +++ g
  OB10G17330.1 19 QYHGVV-RAADGRWKGYVTN----K-FdMRYEVGSHGTPEEAALAHDRAVLAILG 67
                  599997.5669****77333....2.259********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.391978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-81977IPR001471AP2/ERF domain
SMARTSM003800.00331984IPR001471AP2/ERF domain
CDDcd000181.58E-111977No hitNo description
SuperFamilySSF541714.38E-81977IPR016177DNA-binding domain
PfamPF008471.0E-42066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
SAQRAMAGAG PNNGIKVVQY HGVVRAADGR WKGYVTNKFD MRYEVGSHGT PEEAALAHDR  60
AVLAILGPLA TSTTLNFCAA FSHTELRFLK GPHAPSQCVA GVISMVMRGA VFDAALEQFA  120
MRAYDAHTDP ELALDVATFR LGNRDDALEV VGCDKERVAF VEAAKNKVHD AAWMRSYLQR  180
RRLVGMTFED EIRWPPMVPP PVVDVGDGFT GNELVYLPYG SCHVDEMIIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G17330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3N2I51e-170J3N2I5_ORYBR; Uncharacterized protein
STRINGOB10G17330.11e-171(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150581718