PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G18940.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 220aa    MW: 24333.2 Da    PI: 5.8933
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G18940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-201162155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++y+GVr ++ +g+++AeIrdp  +   +r++lg+f+taeeAa+a+++a+ + +g
  OB10G18940.1 11 TKYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAYAQRG 62
                  69********.**********8333..4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.55E-181148No hitNo description
PfamPF008479.1E-141162IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-221271IPR016177DNA-binding domain
PROSITE profilePS5103224.2231270IPR001471AP2/ERF domain
SMARTSM003803.0E-311276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-301271IPR001471AP2/ERF domain
PRINTSPR003678.9E-121324IPR001471AP2/ERF domain
PRINTSPR003678.9E-123652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEGDRSKDAA TKYRGVRKRP WGKFAAEIRD PERGGARVWL GTFDTAEEAA RAYDRAAYAQ  60
RGAAAVLNFP AAAAAAGSSS SSSSAQGGGR PGASRGEKIE FEYLDDKLLD DLLDDEKYRA  120
SIWYPGCSFV HYLYMARRDG KGIQEPKAKG PLKGDDKFSS LQVEGKWVMF IEPIPTQNDI  180
VFFQIQDSKG VVEGMFLTTD NPMYTTTYST DDKMNLVQTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-271210814114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G18940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0259075e-81AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence.
GenBankAP0149665e-81AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126185e-81CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697311.11e-77PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC59e-33ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLJ3N2Z61e-161J3N2Z6_ORYBR; Uncharacterized protein
STRINGOB10G18940.11e-162(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-16ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]