PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G19740.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 170aa    MW: 19368.6 Da    PI: 5.1114
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G19740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.98.1e-274899355
       G2-like  3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  rl Wt +LH++F+ av++L G++kA+Pk+il +m+vk Lt+e+v+SHLQkYR+
  OB10G19740.1 48 RLSWTAQLHRQFIAAVKHL-GEDKAVPKKILGIMNVKHLTREQVASHLQKYRM 99
                  9******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.98843102IPR017930Myb domain
SuperFamilySSF466893.17E-1945103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-2646102IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-2548101IPR006447Myb domain, plants
PfamPF002496.0E-84898IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAASSATDPA TTRTASEGST PLENEVRDDD MEHSNGEITD IRGLRECRLS WTAQLHRQFI  60
AAVKHLGEDK AVPKKILGIM NVKHLTREQV ASHLQKYRMR QKKSIPTASR SKCFDQDGCM  120
EITDYSLPKD DLSSGSECML EERKDYPSED LQDLQWDSDK QEYGPCLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-1845103462ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G19740.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661837.11e-125PREDICTED: two-component response regulator EHD1-like
SwissprotQ7Y0W32e-85EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLJ3N3761e-125J3N376_ORYBR; Uncharacterized protein
STRINGOB10G19740.11e-125(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.23e-20response regulator 1