PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB10G22360.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 333aa MW: 34476.3 Da PI: 8.6769

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB10G22360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	76.2	1.1e-23	49	97	7	55
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 eq+Cyv+C +C+t+l+vsvPs+slfk+vtvrCGhC+sll+vn++ OB10G22360.1 49 QEQLCYVHCHYCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVNMRGLLL 97 79***************************************99887654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-24	48	103	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSSSSSSSAS SAASAAFRPA VRREEQQVDE KFPAAAAGTQ GGGGPRAEQE QLCYVHCHYC 60 DTVLVVSVPS SSLFKTVTVR CGHCSSLLTV NMRGLLLPTT PTSAAATVAA ATAPPPPPPP 120 PAASAKHFPH SLNLAPTGNH HSLLVRDSPP LPSYLGSLHA SRRDIERERH EQPAAAGAAR 180 PRLPDGECSS RLQEQQRPGA AAGPTPPPPA PAAGAGAGDE RGERAVPPDE HRRQQTSGEE 240 AARAVGVQPL HQGRNPTHQG WQSRHLAQGG LQRGCQELGT LSTHPLWAHA GSPGAQEGQP 300 ASSGSSEKGW ATKGRALRSG GQHGCCTVLI KLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB10G22360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274015	1e-134	AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	J3N3Y8	0.0	J3N3Y8_ORYBR; Uncharacterized protein
STRING	OB10G22360.1	0.0	(Oryza brachyantha)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	6e-14	YABBY family protein