PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G24100.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 198aa    MW: 21261.2 Da    PI: 8.4831
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G24100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.7e-2339115171
                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                   f+kv tpsdv+k++rlv+pk++ae++        gg   ++  l++ed++g+ W+++++y+++s++yv+tkGW++Fv a
  OB10G24100.1  39 FEKVVTPSDVGKLNRLVIPKQHAERYfpldaaaaGGG--KGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVPA 115
                   99**************************999987544..5668*********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-3132115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2336113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-2037113No hitNo description
PfamPF023629.9E-2139115IPR003340B3 DNA binding domain
PROSITE profilePS508639.26339147IPR003340B3 DNA binding domain
SMARTSM010192.3E-939147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEFTPIAPPP LQLHHSGAGE EDGACAAAAW AVVEKEHMFE KVVTPSDVGK LNRLVIPKQH  60
AERYFPLDAA AAGGGKGLVL SFEDRTGKAW RFRYSYWNSS QSYVMTKGWS RFVPAAVVLK  120
SMPVHVAASA VQEATTRPKR VRLFGVNLDC PAVMDDDEDN IARAARAAAS SLLQLPSPSS  180
STSSSTGGKK MCSLDLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-4332113180B3 domain-containing transcription factor NGA1
5os9_B2e-4332113180B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G24100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0741962e-70AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence.
GenBankAP0149662e-70AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-70CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697062.11e-108PREDICTED: putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN84e-56Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLJ3N4G21e-144J3N4G2_ORYBR; Uncharacterized protein
STRINGOB10G24100.11e-145(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-40B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]