PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G25000.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 652aa    MW: 73412.7 Da    PI: 12.3847
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G25000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS120.22.6e-37506651225374
          GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                   + vL+lvk+l +kvvv v++ +d+++ sF+++++++l+    l++s++a  +++ ++++k+Er ll+++i++ v  ++++    + +++ Wr+ +++
  OB10G25000.1 506 PPVLRLVKRLGAKVVVSVDRGCDRSDLSFAAHLFQSLQSAFILLESIDAF-GTDPDTASKIERYLLQPAIEQSVLGRHRA---AMDKVAPWRSVFTS 598
                   569*********************************************98.8888*******************999888...8999********** PP

          GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   aGF pv+ +++a++qa++ll+kv+++g+rve++ gsl+l+W++ +LvsvSaWr
  OB10G25000.1 599 AGFVPVQATTFAESQAESLLNKVHVRGFRVEKRAGSLCLYWQRGELVSVSAWR 651
                   ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.5561631IPR005202Transcription factor GRAS
PfamPF035149.1E-35506651IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MGGXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXWGLAPGK  60
GGMPPAPCCL MRRRRRGWRR TIPSFAGSLA ARTRPREEVA NAGGKEEWVH QLTPLDMGLG  120
AGEGWDAAGA VLSDAAGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX HVGGRDATAP LCLLLQGGFA PSAIPHRRRP  360
RVVGVDAVRR GGQARRVQGL LGGLPGAPVR APHLRPGGAR RADRRGVHPR ARLRHRHGRA  420
VGVADARARP APPGHGAQGD RIGVAVVAPP ARAAAHPREP LQLRRGARRL LPVHRLQHRH  480
PRPGRAPRHR QRRRRHRRPP PRPPPPPVLR LVKRLGAKVV VSVDRGCDRS DLSFAAHLFQ  540
SLQSAFILLE SIDAFGTDPD TASKIERYLL QPAIEQSVLG RHRAAMDKVA PWRSVFTSAG  600
FVPVQATTFA ESQAESLLNK VHVRGFRVEK RAGSLCLYWQ RGELVSVSAW RC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1487496RHRQRRRRHR
2489496RQRRRRHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G25000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3N4Q20.0J3N4Q2_ORYBR; Uncharacterized protein
STRINGOB10G25000.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-39GRAS family protein