PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB10G25700.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 260aa MW: 28887.6 Da PI: 6.549

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB10G25700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.6e-16	95	139	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky OB10G25700.1 95 PWTEEEHKKFLDGLRQLGKGDWRGISKNFVTTRTATQVASHAQKY 139 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.539	88	144	IPR017930	Myb domain
SuperFamily	SSF46689	8.61E-18	89	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-18	91	143	IPR006447	Myb domain, plants
SMART	SM00717	9.9E-11	92	142	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.9E-12	93	139	IPR009057	Homeodomain-like
CDD	cd00167	1.90E-10	95	140	No hit	No description
Pfam	PF00249	5.2E-13	95	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEKQEEVAAA GMRPPVMFRL FGVEVRGGVD EEEYDDEGVE DGFLKKSSSM PNLTSIDPLL 60 PADGGKRRAS DDSELASGQQ KRRRRKVQER KKGIPWTEEE HKKFLDGLRQ LGKGDWRGIS 120 KNFVTTRTAT QVASHAQKYF LRQINPGKKK RRASLFDVVS EYNDDQLPSP QSVGTKPAPT 180 QEIIHTDRGD VLIPSYPVAR GFRGDSVQVD ELTEYVERSK AVEEMSLSMV SGLEMASSSI 240 SSLELSIAPP HGAIEAIKVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	85	KRRASDDSELASGQQKRRRRK
2	80	85	KRRRRK
3	80	91	KRRRRKVQERKK
4	81	91	RRRRKVQERKK
5	147	151	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB10G25700.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK288986	0.0	AK288986.1 Oryza sativa Japonica Group cDNA, clone: J090086G02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006662604.2	1e-179	PREDICTED: transcription factor DIVARICATA-like
Swissprot	B8BI93	1e-134	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	1e-134	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	J3N4X2	0.0	J3N4X2_ORYBR; Uncharacterized protein
STRING	OB10G25700.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	2e-31	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]