PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G25910.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 287aa    MW: 31264.4 Da    PI: 10.5266
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G25910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix712.2e-2214103186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   +Wt +e+laLiea+r ++e+lr+g+l++ +W++v+ ++        +  ++s +qC++k+e+l+kry+++++++ +r+  +  ++p+f+ l+
  OB10G25910.1  14 CWTPDETLALIEAYRVRWEALRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERTRAAGRS--KAPKWPFFSLLH 103
                   8*************************************99998888899**************************984..4458****9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2013104No hitNo description
SMARTSM005950.002122106IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
GGAGGSARRL PPPCWTPDET LALIEAYRVR WEALRKGNLR ASDWDDVAGA VTARCGRFPT  60
ATHKSGVQCR HKIEKLRKRY RAERTRAAGR SKAPKWPFFS LLHDLAGGGA PDPSPNPIIK  120
IKSKGPPPPP AAASPSPTSP SPVSSPSSEE AGADAGRSRS LHGLISNGGG GSGLRFTIPK  180
ASRSKPVSRE PKVEKSDEDT EAEAMAEVAS ALRAVGEKFL RMEERRLEMS LRIEKERMES  240
EMKRTQTLLD AQQLFVEAFL SKQQQQQLHH HHKKAKVISS AAAMDED
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G25910.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847631e-169AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAP0149661e-169AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-169CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662073.10.0PREDICTED: trihelix transcription factor ASIL2-like, partial
TrEMBLJ3N4Z30.0J3N4Z3_ORYBR; Uncharacterized protein
STRINGOB10G25910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-27Trihelix family protein