PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G10740.1
Common NameLOC102700186
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 230aa    MW: 25790.4 Da    PI: 8.3443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G10740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.54.9e-2245106259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                   dDg++WrKYG K+  +s++pr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  OB11G10740.1  45 DDGHQWRKYGEKKLSNSNYPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 106
                   8***************************99999*******8761679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-2432107IPR003657WRKY domain
SuperFamilySSF1182901.19E-2236107IPR003657WRKY domain
PROSITE profilePS5081116.61639108IPR003657WRKY domain
SMARTSM007749.7E-3344107IPR003657WRKY domain
PfamPF031061.2E-2445105IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MALDSVPSYP IDLGSTTTTP PQQQQRLSAR KEERTWTTAT YAPYDDGHQW RKYGEKKLSN  60
SNYPRFYYRC TYKNDMKCPA TKQVQQKDTN DPPLFSVTYF NHHTCNSSSK IVGSTPDSAA  120
QSSSRKAISI CFNSHCATSE QPTFLSSSAS LLSPSIQSYS SNQQPDRNTY TRQFQWADTW  180
SSTPTSNGPV KMEVDDQHAE ASVSPSATGA LSRTLLPIGQ SRCIEYFQFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-1645105968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G10740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662677.11e-172PREDICTED: probable WRKY transcription factor 62
TrEMBLJ3N5I81e-170J3N5I8_ORYBR; Uncharacterized protein
STRINGOB11G10740.11e-171(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-20WRKY DNA-binding protein 46