PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G10770.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 184aa    MW: 19396.3 Da    PI: 4.1118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G10770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY253.9e-089532259
                  EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
          WRKY 22 rsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59
                   sYYrCt +   gC +kk v+r+++ +       ++ Y +eH+++
  OB11G10770.1  9 ESYYRCTNStdqGCGAKKTVQRNDDGGgggaARYTVAYISEHTCK 53
                  59*****988889**********9654232256788999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182908.76E-8953IPR003657WRKY domain
PfamPF031061.8E-9953IPR003657WRKY domain
SMARTSM007749.3E-61054IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-81054IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MACEKAPGES YYRCTNSTDQ GCGAKKTVQR NDDGGGGGAA RYTVAYISEH TCKSVESVAP  60
VILETTIVPT AGSAAESVSP PTSSSSDIIT TTWSSTGSSW SGQHGDFCRQ LIASGDDCCW  120
DNTFTPTTAT SANSAVVQEM DLTGPIRSPV HMAVPDGNWM GYLVLNNDLI DDIFDGSINN  180
LFSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G10770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619481.11e-38WRKY transcription factor SUSIBA2
TrEMBLJ3N5J11e-133J3N5J1_ORYBR; Uncharacterized protein
STRINGOB11G10770.11e-134(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058