PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G12080.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 209aa    MW: 23004.3 Da    PI: 5.8247
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G12080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS139.24.3e-431318135203
          GRAS  35 gdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLl 129
                     +  Rlaa+f+ AL+++l++ v+++++al + ++s  +      a++  ++v P+lk+++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL+
  OB11G12080.1  13 SPASSRLAAVFADALSRKLLNLVPGISSALLSLANS-ADAHLIPVARRHMFDVLPFLKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALF 108
                   35789************************9777776.34455556788899********************************966899******** PP

          GRAS 130 qaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEala 203
                   +a+ sR+egpp+lRiT+v++    ske l +++  L+k Ae++++pf+fn+ v+ +l+++++++L     v++gEala
  OB11G12080.1 109 HAFRSRREGPPHLRITAVHD----SKEFLATMATVLSKEAEAFDIPFQFNA-VEAKLDEMDFDALrhdlGVRSGEALA 181
                   ********************....9**************************.7999****999883333555688886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.1621209IPR005202Transcription factor GRAS
PfamPF035141.5E-4013181IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MFQDDMLSSA TSSPASSRLA AVFADALSRK LLNLVPGISS ALLSLANSAD AHLIPVARRH  60
MFDVLPFLKL AYLTTNHAIL EAMEGERFVH VVDFSGPAAN PVQWIALFHA FRSRREGPPH  120
LRITAVHDSK EFLATMATVL SKEAEAFDIP FQFNAVEAKL DEMDFDALRH DLGVRSGEAL  180
AGRGGARPLL FVIEEAQAYF TFDREFLCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-21918146216Protein SCARECROW
5b3h_A3e-21918145215Protein SCARECROW
5b3h_D3e-21918145215Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G12080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780320.0FQ378032.1 Oryza brachyantha chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698206.11e-110PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR83e-43SCL3_ARATH; Scarecrow-like protein 3
TrEMBLJ3N5X21e-148J3N5X2_ORYBR; Uncharacterized protein
STRINGOB11G12080.11e-149(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-42scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]