PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G13410.1
Common NameLOC102703623
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 433aa    MW: 49148.9 Da    PI: 5.7963
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G13410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.61.2e-26114210186
      trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                   +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++++++++ ++d+++
  OB11G13410.1 114 KWTDSMVKLLITAVSYTGEDPGADFgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACDVVENHTLLDHMD 210
                   7*******************998633344566777**********************************************55************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-20112235No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEGGGLPPGN MMQGPPCGSL DFPMQTNPPH SGNQVFNQPQ IPGNFIIPMD RATGPDNISD  60
GVQLGQGGNI SHHHHHKHRS KNCGSDNEEH DMNEDAVDPQ TGKDKKGTAW HRMKWTDSMV  120
KLLITAVSYT GEDPGADFGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL  180
NKRYKRLTDI LGRGTACDVV ENHTLLDHMD ISEKMKEDAR KILSSKHLFY EEMCSYHNNN  240
HMNLPEDPAL QQSLMFALRC KDDNDLRRHA RGDAEQDDDQ SEDSDYEEND EAVDTSIRGS  300
SMHKRMWDVV DHGDVGFVTS CSNDGSGRSA PYDTILDINK TFPDGTDLAL VQKDLALKAA  360
EIQKHRLQIE TKAVQLAKQR LKWERFRESK DRELEMMALE NEQMMLENKR FELDLRNQEL  420
ELEIKIKGND NRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G13410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205330.0AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662760.10.0PREDICTED: uncharacterized protein LOC102703623
TrEMBLJ3N6A50.0J3N6A5_ORYBR; Uncharacterized protein
STRINGOB11G13410.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-87sequence-specific DNA binding transcription factors