PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G14310.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 230aa    MW: 26311.2 Da    PI: 10.0172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G14310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.9e-4891301128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtd+elv++yL++k+ g +l +  vi+evd+yk++PwdLp+k+ ++ekewyfFs+rd+ky++g+r+nra   gyW+a g dk+v s   
  OB11G14310.1   9 LPPGFRFHPTDDELVMYYLCRKCGGLPLAA-PVIAEVDLYKFNPWDLPEKAMGGEKEWYFFSPRDRKYPNGQRPNRA---GYWRAAGADKPVGS--P 99 
                   79*************************999.89***************8888999*********************6...************99..7 PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   + v +kk Lvfy g+ p+g+kt+W+mheyrl
  OB11G14310.1 100 RPVAIKKALVFYAGKPPRGVKTNWIMHEYRL 130
                   79***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-575161IPR003441NAC domain
PROSITE profilePS5100554.0219161IPR003441NAC domain
PfamPF023659.6E-2510130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MECGGALQLP PGFRFHPTDD ELVMYYLCRK CGGLPLAAPV IAEVDLYKFN PWDLPEKAMG  60
GEKEWYFFSP RDRKYPNGQR PNRAGYWRAA GADKPVGSPR PVAIKKALVF YAGKPPRGVK  120
TNWIMHEYRL ADVDRSAAAR KTKSNNALRL DDWVLCRIYN KKGVIERYDT VDAGEDVKPA  180
TASRYTGSQN QTKFNRARHL HRQKQPKYNR DKFMLLGDVM QTCMHATIEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-73716713174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G14310.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281840.0AB028184.1 Oryza sativa mRNA for OsNAC5 protein, complete cds.
GenBankAK0633990.0AK063399.1 Oryza sativa Japonica Group cDNA clone:001-114-H12, full insert sequence.
GenBankAK1024750.0AK102475.1 Oryza sativa Japonica Group cDNA clone:J033094I01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697580.11e-131PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 71-like
SwissprotQ53NF71e-122NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLJ3N6J51e-172J3N6J5_ORYBR; Uncharacterized protein
STRINGOB11G14310.11e-173(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.17e-93NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]