PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G14640.1
Common NameLOC102705762
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 435aa    MW: 49679.7 Da    PI: 10.0973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G14640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.6e-1761150198
                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   ff vl+++ +l+  r+ +p +f  ++ ++++++  +++l d+sg++W+ +l  +  s+++ +  GWk+Fv++n ++ g fvvF++d+rs f   v v
  OB11G14640.1  61 FFRVLLTPQSLE--RMKIPSSFN-QClQNQPTG--MVSLADRSGNTWSAEL--TSDSEGFCFVHGWKQFVRDNFIQCGQFVVFTYDKRSHF--SVVV 148
                   666776666665..58******8.564767666..8***************..*********************************99999..7777 PP

                   E- CS
            B3  97 fr 98 
                   f+
  OB11G14640.1 149 FD 150
                   76 PP
2B350.73.2e-16329420398
                   EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++++ s+v     + +p +f++e+   +++sk +tl d++g+ W v++ y   ++   +++GW +F+  n+L+  D++vF+l+++++   +v+++r
  OB11G14640.1 329 QIMMESYVYVGFFMNIPCEFVRECL--PRTSKRITLWDPQGKAWAVNYVYYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDN--IKVHIYR 420
                   6799999999**************6..457889***************995555556799*********************998444..5788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.18E-1559150No hitNo description
PROSITE profilePS5086313.36659152IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-2060152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-2160157IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-1161152IPR003340B3 DNA binding domain
PfamPF023626.3E-1561149IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-25318420IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-24320420IPR015300DNA-binding pseudobarrel domain
CDDcd100174.01E-23325420No hitNo description
SMARTSM010191.8E-13327422IPR003340B3 DNA binding domain
PROSITE profilePS5086313.408327422IPR003340B3 DNA binding domain
PfamPF023621.6E-14329420IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MRDMGRRSRE GEGEEEERAV AASRVVREEQ GGRMEKEKRK EKGKGKEKER REEDKHFGRS  60
FFRVLLTPQS LERMKIPSSF NQCLQNQPTG MVSLADRSGN TWSAELTSDS EGFCFVHGWK  120
QFVRDNFIQC GQFVVFTYDK RSHFSVVVFD PSGIDKMPSH FTHLSKKLII KTESDEMGID  180
NAAITSEKMA PLPKDNNRTA GKIAIDVDCH MEDRVLLKKS NEANVSGSAK RKRSRASLGK  240
SKATSISHNS TKDSSNNMSD EDMSCSKSPK APFLMRFMSG EVARRGKCMS RGQRQLRVIS  300
QRRPVTEAEK DHALQRAKEF KSKNPFVLQI MMESYVYVGF FMNIPCEFVR ECLPRTSKRI  360
TLWDPQGKAW AVNYVYYSDR SVGSFSGGWG KFAVGNNLEK FDVCVFELVQ KDNIKVHIYR  420
VVPEITPPKL QADKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1430042122142B3 domain-containing transcription factor VRN1
4i1k_B4e-1430042122142B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G14640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663274.20.0PREDICTED: B3 domain-containing protein Os11g0197600-like
SwissprotQ2R9D20.0Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLJ3N6M80.0J3N6M8_ORYBR; Uncharacterized protein
STRINGOB11G14640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]