PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G14920.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 141aa    MW: 16180.4 Da    PI: 9.438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G14920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-182671147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
     OB11G14920.1 26 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 71
                     899*****************************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.7262176IPR017930Myb domain
SuperFamilySSF466897.99E-202486IPR009057Homeodomain-like
SMARTSM007172.1E-142574IPR001005SANT/Myb domain
PfamPF002492.6E-172671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-282790IPR009057Homeodomain-like
CDDcd001675.37E-142970No hitNo description
PROSITE profilePS500904.04373141IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGSSSTTNTS DGAVKPASSA SSACPRGHWR PGEDEKLRQL VEKYGPQNWN SIAEKLEGRS  60
GKSCRLRWFN QLDPRINKRP FTEEEEERLL AAXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXTAFRR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-152692470MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-152692470C-Myb DNA-Binding Domain
1msf_C1e-152692470C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G14920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2660211e-96FJ266021.1 Oryza brachyantha clone OB__Ba045I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169060.12e-50myb domain protein 69
TrEMBLB9V0J18e-59B9V0J1_ORYBR; Myb-like DNA-binding domain containing protein
TrEMBLJ3N6Q61e-59J3N6Q6_ORYBR; Uncharacterized protein
STRINGOB11G14920.12e-60(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.19e-36myb domain protein 52