PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G16300.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 162aa    MW: 18371.3 Da    PI: 5.2337
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G16300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18554255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa+a++ a++ l+g
  OB11G16300.1  5 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAAAHDVAALTLRG 54
                  69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-31562IPR001471AP2/ERF domain
SMARTSM003807.9E-36568IPR001471AP2/ERF domain
CDDcd000187.35E-20562No hitNo description
PROSITE profilePS5103223.169562IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21562IPR016177DNA-binding domain
PfamPF008472.3E-12654IPR001471AP2/ERF domain
PRINTSPR003671.2E-9617IPR001471AP2/ERF domain
PRINTSPR003671.2E-92844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAGGQYRGVR KRKWGKWVSE IREPGKKTRI WLGSFESPEM AAAAHDVAAL TLRGREARLN  60
FPGLAHRXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XALEWDVLVG AGDELEARSP  120
NMWAELAEAM LMAPPVWEGG VADNDEWAHQ ASSLWDPSVW DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-16362363ATERF1
3gcc_A3e-16362363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G16300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1196717e-64AC119671.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0084F23, complete sequence.
GenBankAC1354607e-64AC135460.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0091I11, complete sequence.
GenBankAP0149677e-64AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126197e-64CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576119.15e-54ethylene-responsive transcription factor ERF022
TrEMBLJ3N7448e-80J3N744_ORYBR; Uncharacterized protein
STRINGOB11G16300.11e-80(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-26ERF family protein