PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G16380.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 154aa MW: 15636.3 Da PI: 6.2249

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G16380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	29.2	2.2e-09	134	154	3	23
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavD 23 +v+Y+eClkNhAa++Gg+a+D OB11G16380.1 134 AVKYRECLKNHAAAIGGNATD 154 799****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.4E-6	135	154	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-4	136	154	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	13.712	137	154	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MVSILQLQTR TEAARRIFAV RRQEEEEEEF EVEVEERMDL SGTQGELPIP MHAAAVASPY 60 AAAAIGGSGG HVMELHHHNE HVSNNGGGHA QSHALQSPAA AAAGESSPVA KKRGLLVAAG 120 TGGGGGGAGA GAAAVKYREC LKNHAAAIGG NATD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G16380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015697610.1	1e-43	PREDICTED: zinc-finger homeodomain protein 4-like
Swissprot	Q53N87	7e-29	ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBL	J3N752	1e-104	J3N752_ORYBR; Uncharacterized protein
STRING	OB11G16380.1	1e-104	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	9e-07	homeobox protein 31