PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G17950.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 294aa MW: 31748.3 Da PI: 5.6632

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G17950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	199	2.9e-61	4	293	27	302
GRAS 27 lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqG 122 + +laspdg+++qRla+ f+eALa + ++l++ l+ ++++ e++aa++ f ++P+++++ aN Ilea+++e vH++D++ s OB11G17950.1 4 VADLASPDGRSLQRLASAFAEALALYVIVPFHGLCRLLQLPQAAP--PGEVAAARHRFRGICPFVRIAGASANLSILEAMDNEeGVVHVVDLGGSDI 98 5689*******************************98888875..7888899999*********************96778****** PP GRAS 123 lQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle..leeLrvkpgEalaVnlvlqlhrll.. 214 QW+ L + +a+Rp+gpp lR+T+v++ + l++ + L+ A++l+++f f+ v +++++l+ +L + g +laV lq+hrll OB11G17950.1 99 NQWVELVRLFAARPRGPPgLLRVTVVNE----ADDVLSAAEGYLTAEAQRLDINFTFRR-VQSSIDALTgvGGALGIVAGQSLAVIANLQMHRLLay 190 **********888879****....89*********************.68888888522689******************* PP GRAS 215 ..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivn 296 + +++++ + d++L+++++lsPk++v++eqeadhn ++ r+ +a++yy+alfd++e+++p s +r++vEr llg+ei++ OB11G17950.1 191 rkearngkgpageqSAQHTMTTKADALLRAIRGLSPKLMVLTEQEADHNVDELQPRVWNAMNYYAALFDAVEESAPLVSpGDRASVERWLLGEEIRD 287 ********985666666678*************************************************9999************ PP GRAS 297 vvaceg 302 +v c g OB11G17950.1 288 IVVCVG 293 **87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.437	1	294	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-58	4	293	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MRWVADLASP DGRSLQRLAS AFAEALALYV IVPFHGLCRL LQLPQAAPPG EVAAARHRFR 60 GICPFVRIAG ASANLSILEA MDNEEGVVHV VDLGGSDINQ WVELVRLFAA RPRGPPGLLR 120 VTVVNEADDV LSAAEGYLTA EAQRLDINFT FRRVQSSIDA LTGVGGALGI VAGQSLAVIA 180 NLQMHRLLAY RKEARNGKGP AGEQSAQHTM TTKADALLRA IRGLSPKLMV LTEQEADHNV 240 DELQPRVWNA MNYYAALFDA VEESAPLVSP GDRASVERWL LGEEIRDIVV CVGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-20	4	293	45	308	Protein SCARECROW
5b3h_A	1e-20	4	293	44	307	Protein SCARECROW
5b3h_D	1e-20	4	293	44	307	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G17950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881539.1	3e-85	scarecrow-like protein 3
TrEMBL	J3N7K9	0.0	J3N7K9_ORYBR; Uncharacterized protein
STRING	OB11G17950.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13716	13	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-52	scarecrow-like 3