PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G20340.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 454aa    MW: 49606.2 Da    PI: 8.9424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G20340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.1e-116891326
                  S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                  ++ C++++rtG C++G +CkF+H+
  OB11G20340.1 68 EPDCSYYMRTGLCRFGMTCKFNHP 91
                  789********************8 PP
2zf-CCCH37.73.4e-12113137327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C+++++tG Ck+G++CkF+H++
  OB11G20340.1 113 QPECQYYLKTGACKFGATCKFHHPR 137
                   799********************96 PP
3zf-CCCH36.67.8e-12159183327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C +++rtG+Ck+G++CkF+H++
  OB11G20340.1 159 EKECAYYLRTGQCKFGSTCKFHHPQ 183
                   679********************97 PP
4zf-CCCH39.59.4e-13320345227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C+f+++tG Ck+G+ CkF+H++
  OB11G20340.1 320 DQPECQFYMKTGDCKFGAVCKFHHPK 345
                   689*********************96 PP
5zf-CCCH38.42.1e-12365391127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C f++r+G+Ck+G++CkF H++
  OB11G20340.1 365 PGEPICTFYSRYGICKFGPNCKFDHPM 391
                   5799*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8686593IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-46592IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-86891IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-57093IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-47192IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6113139IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9113137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4116138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619156184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-6156184IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5156183IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9159183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4162182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511318346IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5318345IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9320345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5321347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4324346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6363390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178364392IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7364391IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9366391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4369389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MPRWTVKVTA SMGRIRFGAA REGLSAAATA VAVAASVIGP HSSDEEAMWQ MNLGEAMEAG  60
PYPERIGEPD CSYYMRTGLC RFGMTCKFNH PADRKMAVAA ARMKGEYPQR IGQPECQYYL  120
KTGACKFGAT CKFHHPREKA AMATRVQLNA LGYPLRPNEK ECAYYLRTGQ CKFGSTCKFH  180
HPQPSNTMVA VRGSVYSPGQ SVTSPGQHTY PGAVTNWPLS RSASFIASPR WPGHSSYAQV  240
IVPPGLVQVP GWNPYAAQIG SSSSDDQQRT AGGAQYYTSS RHSETPTMGD QGMFSSYQAG  300
SVPLGLYTVQ RESIFPERPD QPECQFYMKT GDCKFGAVCK FHHPKERIVP TPNCALSSLG  360
LPLRPGEPIC TFYSRYGICK FGPNCKFDHP MGTVMYGLAT SPTGDMSTAR RMLAPVPAHS  420
EVSPDSVSGR SRRITHSDSQ QLPSGERSTE REAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G20340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617448.20.0zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLJ3N8980.0J3N898_ORYBR; Uncharacterized protein
STRINGOB11G20340.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]