PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G21440.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 180aa    MW: 19818.2 Da    PI: 5.2464
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G21440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.93.3e-35181481128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppG+ F+Pt++elvv+yL +++ + +l++ ++i+++di +++Pwd   + +++++  yfF+++++++  ++r nra+ +g+W++ g+d +v+ +  
  OB11G21440.1  18 LPPGCVFRPTEDELVVHYLYRRAIQAPLPC-DFIADIDISRHNPWDVV-REEEKTNGRYFFTRKENNH-GDHRGNRAAGDGFWRSEGSDVPVYYNdg 111
                   79****************************.99**************6.445667799****999876.579**********************965 PP

           NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ lvg+k+tLvf+ +++p++++t Wvm+e+rl
  OB11G21440.1 112 daadGDMLVGMKRTLVFHCKSSPSAQRTGWVMQEFRL 148
                   55544555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3714156IPR003441NAC domain
PROSITE profilePS5100534.48618180IPR003441NAC domain
PfamPF023656.3E-2119148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAGTGACITM ADGTTMRLPP GCVFRPTEDE LVVHYLYRRA IQAPLPCDFI ADIDISRHNP  60
WDVVREEEKT NGRYFFTRKE NNHGDHRGNR AAGDGFWRSE GSDVPVYYND GDAADGDMLV  120
GMKRTLVFHC KSSPSAQRTG WVMQEFRLAG ASLLPCPVMA DAAADGSNPS NNCTEATITQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-261614813140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G21440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697668.11e-127PREDICTED: NAC transcription factor NAM-1-like
TrEMBLJ3N8K81e-133J3N8K8_ORYBR; Uncharacterized protein
STRINGOB11G21440.11e-134(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-34NAC domain containing protein 83