PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G21460.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 416aa    MW: 46828.8 Da    PI: 10.0675
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G21460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.66e-20181211109
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lp G+ F+P+d elv +yL +++ + +l + ++i +v+i++++Pwd+  +v  e++  +fF+++++k++ ++r+nrat +g+W++      v+   +
  OB11G21460.1  18 LPTGYVFRPSDGELVLHYLYRRAIQVPLLC-DFIIDVEILRHNPWDIV-RV-DEKNGKHFFTRKERKHPGDHRSNRATGNGFWRQRTP--YVIIPPS 109
                   699************************988.89**************6.55.346799*************************97644..3333344 PP

           NAM  98 elvglkktLvfy 109
                     +    +L+f 
  OB11G21460.1 110 ISIAREVVLAFQ 121
                   445555555554 PP
2NAM49.81.2e-1519026455128
           NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +   yfF+k+++ky+ ++r+nr++ +g+W+  g++k+v+ +     ++ lvg+k+tL+f+     + ++t+W m e+rl
  OB11G21460.1 190 DGGRYFFTKKETKYPGSQRSNRVAIDGFWRFAGSEKPVYYNpadggDRMLVGMKRTLTFH----YRISRTRWGMTEFRL 264
                   4567******************9999**************9898877777*********9....45678********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-238100IPR003441NAC domain
PROSITE profilePS5100521.84718164IPR003441NAC domain
PfamPF023658.5E-1419264IPR003441NAC domain
SuperFamilySSF1019412.22E-16182274IPR003441NAC domain
PROSITE profilePS5100512.611194333IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAGSGVFMTL LNVTTVHLPT GYVFRPSDGE LVLHYLYRRA IQVPLLCDFI IDVEILRHNP  60
WDIVRVDEKN GKHFFTRKER KHPGDHRSNR ATGNGFWRQR TPYVIIPPSI SIAREVVLAF  120
QPLAMQAKGA KSAFSTSWGS HPPIITASCL TLWRRDLMSQ LMLRTTSMVM MAMARTNQRI  180
ELNWVERWSD GGRYFFTKKE TKYPGSQRSN RVAIDGFWRF AGSEKPVYYN PADGGDRMLV  240
GMKRTLTFHY RISRTRWGMT EFRLASSGLL PCPVMKRVIG DGSNPPCNCA EATIVKTNDA  300
LSAVLRYALS LAPLVKTSIK PDGSWLICRI YRKRQRAPRV VVPPAIANAG EENVAPPAND  360
NAREAQVHFV DFMRQAPHLD QSSPCSCIMD PALEERSDES AGGSNEKDQE ANSAAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-1316981397Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G21460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.19e-78NAC transcription factor 25
TrEMBLJ3N8L00.0J3N8L0_ORYBR; Uncharacterized protein
STRINGOB11G21460.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-17NAC domain containing protein 83