PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G21480.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 68aa    MW: 8089.67 Da    PI: 12.6358
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G21480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.2e-171143234
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdae 34
                  ri+n   rqvtfskRr g++KKA EL +LCdae
  OB11G21480.1 11 RIDNLAARQVTFSKRRRGLFKKAGELFILCDAE 43
                  79*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-12264IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.175244IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-16344IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-12424IPR002100Transcription factor, MADS-box
PfamPF003191.4E-151144IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-122439IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MGKRGRIAIW RIDNLAARQV TFSKRRRGLF KKAGELFILC DAELGRPRRL LRHRRQALPV  60
RQHKKLQT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G21480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297622e-59AC229762.1 Oryza minuta clone OM__Ba0149B10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793840.11e-17MADS-box transcription factor 47-like isoform X1
RefseqXP_025793841.11e-17MADS-box transcription factor 47-like isoform X1
RefseqXP_025793842.11e-17MADS-box transcription factor 47-like isoform X1
RefseqXP_025793844.11e-17MADS-box transcription factor 47-like isoform X2
SwissprotQ5K4R02e-15MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLJ3N8L22e-40J3N8L2_ORYBR; Uncharacterized protein
STRINGOB11G21480.14e-41(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.29e-15AGAMOUS-like 71
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]