PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G22500.1

Common Name

LOC102708657

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YC

Protein Properties

Length: 257aa MW: 28121.3 Da PI: 5.1045

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G22500.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.8	5.9e-19	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v r fdfl+++v + OB11G22500.1 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVRRYSSFDFLTEVVNK 86 579************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.0E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	1.82E-20	4	99	IPR009072	Histone-fold
Pfam	PF00808	6.0E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRT YEITLQSGAK 60 TLNSFHLKQC VRRYSSFDFL TEVVNKVPDL GGADSCGDDR ALPRRRKALP NGSDPENEES 120 RSSKMAVRSA NISPRGRGRG RGRGRGRPPT KRKEVGYVQF EDESSMFAEQ GEPLPGEETV 180 PETIHGNDSI PQSAQPPAEA PSAAAIPAAD SKVEETKNDH QPDWPMPDAI GNIGVGPSGF 240 GHLTVQVDED EDYDNED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	106	PRRRK
2	136	145	RGRGRGRGRG
3	136	146	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G22500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF464904	0.0	AF464904.1 Oryza sativa repressor protein (DrAp1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006662993.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	J3N8W4	0.0	J3N8W4_ORYBR; Uncharacterized protein
STRING	OB11G22500.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-53	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Entrez Gene	102708657