PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G23120.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 162aa    MW: 17852.5 Da    PI: 10.9693
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G23120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-16611143992
                   EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
            B3  39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   + + g++W+++++y+++s++yvltkGW++Fvk++gL +g    F+++  ++ +l
  OB11G23120.1  61 RKLPGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGVAGGFYYSAGKDVQL 114
                   55679**********************************999999886566555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1855128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1361119IPR015300DNA-binding pseudobarrel domain
PfamPF023629.6E-1461116IPR003340B3 DNA binding domain
CDDcd100172.40E-126599No hitNo description
PROSITE profilePS508639.17865120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MARIPATIFA VVSGHVLYIY NNFTRISYSA KSNDAAQRRR QRASHELGTV DPNPDDAAAA  60
RKLPGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGV AGGFYYSAGK DVQLFIDCKI  120
RSKQSAMSAF LRAMVATPTA PAVKAIRLFG IDLLTGGGAR AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-216512261118DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G23120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1307252e-58AC130725.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0494H05, complete sequence.
GenBankAC1359252e-58AC135925.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0560C03, complete sequence.
GenBankAC1364922e-58AC136492.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0554F08, complete sequence.
GenBankAK2433632e-58AK243363.1 Oryza sativa Japonica Group cDNA, clone: J100061M08, full insert sequence.
GenBankAP0149612e-58AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655554.12e-39PREDICTED: AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ8RZX92e-32Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLJ3N9261e-115J3N926_ORYBR; Uncharacterized protein
STRINGOB11G23120.11e-116(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-25related to ABI3/VP1 2