PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G23400.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 220aa    MW: 24573.9 Da    PI: 9.2336
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G23400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.54.5e-14186218131
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyr 31 
                   C+nCg ++  Tp++R+gp+g+kt CnaCGl+++
  OB11G23400.1 186 CTNCGESSdaTPMMRHGPNGTKTFCNACGLMWA 218
                   ********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.2236297IPR010399Tify domain
PfamPF062036.2E-11124164IPR010402CCT domain
PROSITE profilePS5101710.477124166IPR010402CCT domain
SuperFamilySSF577161.19E-7183218No hitNo description
CDDcd002023.09E-10185217No hitNo description
Gene3DG3DSA:3.30.50.107.1E-12185219IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.0E-12186218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
TAGVFEEYPF FSDIVIPFDL FLGGLGDDDC NVDDQAASGQ QKKKSRSLPE PETQKQLSPA  60
QQHGGEERLV MYYRGREFVF DSVQPQKIEN IILHLNGEGM IPQSIRPHPT NLVRPIAVPE  120
NFDRFAALTR YREKKRNIKF ITKADYSARR QVALRMKRSK GKFAPTVGTS EVSLGSGVHR  180
KGITFCTNCG ESSDATPMMR HGPNGTKTFC NACGLMWANS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G23400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126197e-40CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663542.11e-162PREDICTED: GATA transcription factor 19-like
TrEMBLJ3N9541e-165J3N954_ORYBR; Uncharacterized protein
STRINGOB11G23400.11e-166(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-32ZIM-LIKE 2