PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G24570.1

Common Name

LOC102719624

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 280aa MW: 30340.8 Da PI: 9.0904

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G24570.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2.1e-05	47	93	1	51
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 +++ + erE+ Rd++N+ f eL ++l + + Ka++L A + + OB11G24570.1 47 KKTHKAEREKLKRDQLNDLFVELSSMLDPE----RQNSGKATVLGDAARVL 93 678899*********************885....23444555666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-8	44	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-11	44	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.823	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0025	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MPQVRNQNLG MVADTESSGS LGGSSNAASE KAVDGSVDKR SQEKAPKKTH KAEREKLKRD 60 QLNDLFVELS SMLDPERQNS GKATVLGDAA RVLRDLVSQV ESLRKEQSAL LTERQYVGSE 120 KNELHEENSM LRAQILELHN ELCARMGSNS LNPSNPVMSQ PVANNSTNSA TQPIPHQIWR 180 NGPNLSNLAM VHPASTLSPL HNQHHHSAGV VGQVYASRPQ ELQLFPGTSV SMEREQSRLG 240 TTPAASSGLT DSLPGQLRLS LPQSSQEESS SGSKKGRKKG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G24570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068017	0.0	AK068017.1 Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006663029.1	0.0	PREDICTED: transcription factor bHLH47-like isoform X1
TrEMBL	J3N9H1	0.0	J3N9H1_ORYBR; Uncharacterized protein
STRING	OB11G24570.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-32	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	102719624