PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G24670.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 93aa MW: 9861.13 Da PI: 4.5682

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G24670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.7e-08	15	56	15	54
HHHHHHHHHHCTSCCC....TTS-.STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkas.kapskK.lsKaeiLekAveYIksL 54 ++ + +++L+ lP +s ++ ++K +s ae+L++A++YI+ L OB11G24670.1 15 QMAELMSKLQAALPANSlGEANGKqVSSAEVLQEACRYIRRL 56 678899*******6667777777*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.651	1	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-8	14	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-5	15	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-7	15	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
SSPPAAAAAA ATDEQMAELM SKLQAALPAN SLGEANGKQV SSAEVLQEAC RYIRRLHREA 60 DALSERLAEL LLQPSDRTIN GADASDLIRS LLM

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G24670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616700.1	2e-39	transcription factor ILI2 isoform X1
Swissprot	B8BLA3	1e-40	ILI2_ORYSI; Transcription factor ILI2
Swissprot	Q2R1J3	1e-40	ILI2_ORYSJ; Transcription factor ILI2
TrEMBL	J3N9I1	2e-57	J3N9I1_ORYBR; Uncharacterized protein
STRING	OB11G24670.1	3e-58	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17004	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	8e-18	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]