PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G25500.1
Common NameLOC102701038
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 261aa    MW: 29000.6 Da    PI: 6.0358
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G25500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-111932331055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  OB11G25500.1 193 KRRRERINERLRILQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 233
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.15E-13181237No hitNo description
Gene3DG3DSA:4.10.280.107.4E-14181242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14181244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-11189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8193233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEAKCGAIWS SADARSEESE MIAHLKSMFW GSSDVDGNLY SPDSSVNSCV TTSTMPCSLF  60
LPLMDYEGYG SVPLMASTGM DICSDHQHQV VATRNKAMSG SKRIFPMDEH FEQQQQKKPQ  120
KKTRPGRSVS STLSSDITDS ETSSELVNST YSSGCSFGED SVATTDESIV LKQNGNLRGH  180
KKSSKDTQSL YAKRRRERIN ERLRILQQLI PNGTKVDIST MLEEAVQYVK FLQLQIKLLS  240
SDDTWMFAPL AYDGMSMGLN Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G25500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697725.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLJ3N9R40.0J3N9R4_ORYBR; Uncharacterized protein
STRINGOB11G25500.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-33bHLH family protein