PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G27850.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 137aa    MW: 15335.6 Da    PI: 8.9437
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G27850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000224668123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C  Cg++F ++  L  H  +H
  OB11G27850.1 46 YECRTCGRRFASHQALGGHRTSH 68
                  99************999998887 PP
2zf-C2H210.70.001684106123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C+ Cg+ F     L  H+r+H
  OB11G27850.1  84 HACEVCGMGFGMGQALGGHMRRH 106
                   67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-43269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.0E-94570IPR007087Zinc finger, C2H2
SMARTSM003550.0974668IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.1E-746106No hitNo description
PROSITE profilePS5015710.7414673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139125.7E-983108IPR007087Zinc finger, C2H2
SMARTSM003550.5784106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.07884106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDDYCTSPHL EEEEDDVQLS LACGSSAATP QSRKRPRRRE EEAAAYECRT CGRRFASHQA  60
LGGHRTSHLR PTKRRPRPSK PVVHACEVCG MGFGMGQALG GHMRRHRPIN NVGMGLKQII  120
MPEIRPSCTL QLLDLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G27850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616383.13e-47zinc finger protein ZAT1
TrEMBLJ3NAE92e-96J3NAE9_ORYBR; Uncharacterized protein
STRINGOB11G27850.13e-97(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.14e-08C2H2 family protein