PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G27860.1
Common NameLOC102701116
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 177aa    MW: 18708.1 Da    PI: 10.54
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G27860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000244668123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C  Cg++Fs+   L  H  +H
  OB11G27860.1 46 FQCRTCGRRFSTFQALGGHRTSH 68
                  89**********99998888877 PP
2zf-C2H219.92e-06101123123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C  Cgk+Fs+   L  H+r+H
  OB11G27860.1 101 HRCDMCGKVFSTGQALGGHMRRH 123
                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-94670IPR007087Zinc finger, C2H2
SMARTSM003550.134668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8664673IPR007087Zinc finger, C2H2
SuperFamilySSF576677.37E-104668No hitNo description
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SuperFamilySSF576677.37E-1096123No hitNo description
PfamPF139121.5E-12100124IPR007087Zinc finger, C2H2
SMARTSM003550.0018101123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4101123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEVATSSTST RSSPVKLMLL LTLSPASKVI SKGSGSCRRV QLGGEFQCRT CGRRFSTFQA  60
LGGHRTSHKR PRVRADGLEL LLGARPGKAG GGGRASSPVV HRCDMCGKVF STGQALGGHM  120
RRHRPLVAAG SRSAVSTTWM GMGTGTTAAA TMSGSSSEER DDDDDDDAHD YNLIHFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G27860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663123.11e-125PREDICTED: zinc finger protein ZAT8-like
TrEMBLJ3NAF01e-124J3NAF0_ORYBR; Uncharacterized protein
STRINGOB11G27860.11e-125(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-22C2H2 family protein