PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G11000.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 161aa    MW: 17348.7 Da    PI: 9.047
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G11000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.84.3e-08142160220
                   --SS-EEEEEEE--TT-SS CS
          WRKY   2 dDgynWrKYGqKevkgsef 20 
                   +Dgy+WrKYG K+++g++f
  OB12G11000.1 142 EDGYQWRKYGEKKIQGTDF 160
                   8***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-7132159IPR003657WRKY domain
SuperFamilySSF1182901.01E-6135160IPR003657WRKY domain
PfamPF031061.7E-5142160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAAAAAAAVA HQAGDDEVAM KEVAQVYELI KTHQPLLLLH HNSQQQQQQL AYSLLTEAMR  60
ALNVALSVMK HLPSSPAPAA IPVNMIKPEV TPASSSTATA ADGGDNQVGG GKPTRRSAAK  120
RRRINGEDKS SCFQLTTMVP HEDGYQWRKY GEKKIQGTDF T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119123KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G11000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663747.11e-115PREDICTED: probable WRKY transcription factor 53
TrEMBLJ3NAU21e-116J3NAU2_ORYBR; Uncharacterized protein
STRINGOB12G11000.11e-117(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663