PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G11010.1
Common NameLOC102702710
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 228aa    MW: 25460 Da    PI: 8.4487
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G11010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.11.5e-2244105259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                   dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  OB12G11010.1  44 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 105
                   8***************************99999*******8761679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-2431106IPR003657WRKY domain
SuperFamilySSF1182907.59E-2335106IPR003657WRKY domain
PROSITE profilePS5081116.38638107IPR003657WRKY domain
SMARTSM007742.2E-3343106IPR003657WRKY domain
PfamPF031064.6E-2544104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MALDSVPSYP SDLGSTTTTP PQQQRLSARK EERTWTTATY APYDDGHQWR KYGEKKLSNS  60
NFPRFYYRCT YKNDMKCPAT KQVQQKDTND PPLFSVTYFN HHTCNSSSKI VGSTPDSAAQ  120
SSSRKAISIC FNSHGATSEQ PTFLSSSASL LSPSIQSYSS NQQPDRNTYT RQFQWADTWS  180
STPTSNGPVK MEIDDHAEAS VSPSATGALS RTLLPIGQSR CIEYFQFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-1644104968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G11010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0732430.0AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664281.11e-170PREDICTED: probable WRKY transcription factor 54
TrEMBLJ3NAU31e-169J3NAU3_ORYBR; Uncharacterized protein
STRINGOB12G11010.11e-169(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-21WRKY DNA-binding protein 55