PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G11030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 393aa    MW: 43637.9 Da    PI: 7.5209
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G11030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.52.7e-18148214358
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS........STTEEEEEEES--SS CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae........dpkvveitYegeHnh 58 
                   Dg++WrKYGqK++++s++prsYYrCt++   +C+++k v++ ++         p + +++Y g+H++
  OB12G11030.1 148 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQREDlnyanngdHPIMYTMVYYGQHTC 214
                   9**************************99999*******9876222222221355677889999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-21141215IPR003657WRKY domain
SuperFamilySSF1182904.05E-19142215IPR003657WRKY domain
SMARTSM007743.5E-29146216IPR003657WRKY domain
PfamPF031061.9E-22148214IPR003657WRKY domain
PROSITE profilePS5081114.584148188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MMKSSSSSKK RSLVADQHPS SVCCDHLAAL REISRGQSLV TQLRAIVLPV LQADERCGIA  60
AQMLEDILDC SRKAMSQLQP LLLSSSDSAH DHVDDKRRVS KISSSSDDDD DHCSSKAAQD  120
HDAKPLRQHK RRRFGDSVSL ETPVPHYDGH QWRKYGQKHI NNSKHPRSYY RCTYRQEEKC  180
KATKTVQQRE DLNYANNGDH PIMYTMVYYG QHTCCKSPAA DDHVVVEASQ NSTETHCQSP  240
SSSSDQQHVA HAGDRRSQCS NISVTCSSSA IVEDCNKLLD MLPAADELTT LRFGHQLGNG  300
CKCTVGLKSM LAPISLEYEV LTIDGSISLL IHCGTRRRQK PVQQHLRHHV AHAGDRRSQC  360
SNISVTCSSS AIVEDCNKLL DMLPAADELT TCT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-131482141068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G11030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891750.0AK289175.1 Oryza sativa Japonica Group cDNA, clone: J100021A14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698568.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLJ3NAU50.0J3NAU5_ORYBR; Uncharacterized protein
STRINGOB12G11030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-17WRKY DNA-binding protein 70