PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G11040.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 213aa    MW: 23695.7 Da    PI: 9.2952
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G11040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.52.3e-22110173359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                   Dgy+WrKYGqK+++g+++prsYYrCt +   gC +kk v+r+++ +       ++ Y +eH+++
  OB12G11040.1 110 DGYQWRKYGQKQIEGAKYPRSYYRCTNStdqGCGAKKTVQRNDDGGgggaARYTVAYISEHTCK 173
                   9*************************988889**********9654232256788999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-2493174IPR003657WRKY domain
SuperFamilySSF1182901.03E-21101173IPR003657WRKY domain
SMARTSM007745.1E-29108174IPR003657WRKY domain
PfamPF031062.2E-23110173IPR003657WRKY domain
PROSITE profilePS5081119.29110151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEAAYWCRVV GRERELQHLL FPTPTTAAAL ADTTAVGGER LPPGLATKIV SRGRKRLRDK  60
NNIVLKLRLD DADDQEMAAD GRDEPLRCSK TRRKQQSTTS TMVTTVPDFD GYQWRKYGQK  120
QIEGAKYPRS YYRCTNSTDQ GCGAKKTVQR NDDGGGGGAA RYTVAYISEH TCKSVESVAP  180
VILETTIVPT AGRAAGTVSV FVGYHHYYME QHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-161101731069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G11040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126191e-32CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616434.17e-61probable WRKY transcription factor 33
TrEMBLJ3NAU61e-158J3NAU6_ORYBR; Uncharacterized protein
STRINGOB12G11040.11e-158(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-15WRKY DNA-binding protein 70