PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G15560.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 225aa    MW: 25059.9 Da    PI: 6.473
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G15560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06545639
      zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                  C+ +e+ e+   C  ++  lC+ C  + H+        H+v
  OB12G15560.1  5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkhHRV 45
                  *****************************667899996655 PP
2zf-B_box19.32.3e-067198431
      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCll 31
                  ++C+ ++ek   +fC +++ llC++C  
  OB12G15560.1 71 PTCDICQEKTGYFFCLEDRALLCRSCDX 98
                  79************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741147IPR000315B-box-type zinc finger
CDDcd000215.89E-4547No hitNo description
SMARTSM003362.3E-6547IPR000315B-box-type zinc finger
SMARTSM003360.56899IPR000315B-box-type zinc finger
CDDcd000210.001857397No hitNo description
PROSITE profilePS501198.63173113IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHHRVALLLP ASAAGTVGPS  60
PAAAAGDDVH PTCDICQEKT GYFFCLEDRA LLCRSCDXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXAGAAASGE VLRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G15560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-31light-regulated zinc finger protein 1