PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB12G16200.1

Common Name

LOC102713973

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 333aa MW: 36094.9 Da PI: 8.3609

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB12G16200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.8	4.4e-23	249	299	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++ l d++ yF+ pi++AA++L+vc+T+LK iCR++G++RWP+Rk++s+ OB12G16200.1 249 TKKLCLGDVAPYFDQPIAKAARKLDVCATALKAICRKNGVQRWPYRKVRSI 299 7899999*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.688	239	319	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-19	252	299	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MLDNFHTDVV DDAPPPPPPP PTLVRSPDHC VASTSSAAPA PPEVTVDCRA CQVLREVVHS 60 NGLETTKLCI HGGDGAFYHA ILDVYRVKSR GLALAHHSII DFRGWGYDWV KQYLTDYAQR 120 RATGGFAVVQ DSLSAFHDAL CTPMPCSSHV SDAYKRAASS VAAARTNGDG DHRLVVQTDA 180 VVQPVASSSG CRVGAEAAAS SGDRQLVIDT AAIQQPASGP SQADHTVHQM QQCFHRADRT 240 ALAIQRERTK KLCLGDVAPY FDQPIAKAAR KLDVCATALK AICRKNGVQR WPYRKVRSID 300 RQIATLRRSG NGDTNEIEML IASRRRIVAG IIE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB12G16200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL831806	2e-47	AL831806.5 Oryza sativa chromosome 12, . BAC OSJNBb0106P21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AL954160	2e-47	AL954160.5 Oryza sativa chromosome 12, . BAC OSJNBb0078J08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	2e-47	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664445.1	0.0	PREDICTED: uncharacterized protein LOC102713973
TrEMBL	J3NCB2	0.0	J3NCB2_ORYBR; Uncharacterized protein
STRING	OB12G16200.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	102713973