PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G17310.1
Common NameLOC102715254
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 529aa    MW: 57121.8 Da    PI: 7.2922
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G17310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-09111136126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   ++++ C ++ ++G C++G +CkF+H+
  OB12G17310.1 111 PGEPDCTYYVKFGSCRFGMKCKFNHP 136
                   5789*********************8 PP
2zf-CCCH26.89.2e-09240262325
                   S---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                   +e+C++++  G CkyG +Ck+ H
  OB12G17310.1 240 QEECKYYSTPGGCKYGKSCKYLH 262
                   699******************** PP
3zf-CCCH34.63.3e-11287311226
                   -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                   ++++C++++rtG Cky  +CkF+H+
  OB12G17310.1 287 GEKECPYYMRTGSCKYATNCKFHHP 311
                   7899********************9 PP
4zf-CCCH215.9e-07433459127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C++f ++G+Ck+  +Ck++H++
  OB12G17310.1 433 PGQPECQYFVKSGFCKFRMKCKYHHPR 459
                   5789*********************96 PP
5zf-CCCH23.78.3e-08479504227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   +++ C ++ r+G Ck+G+ C ++H++
  OB12G17310.1 479 DQPVCTYYGRYGVCKFGPACAYNHPF 504
                   6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.258110138IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013110137IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6112136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727238265IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-4238264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5240265IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-6240262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5243263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793285313IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5285312IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8287311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6288312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4291310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685432460IPR000571Zinc finger, CCCH-type
SMARTSM003560.009432459IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-5436460IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732477505IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081477504IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5478504IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5479504IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MADADARAPP KSDPDATPIG SISPSSRSSA AAAFEEVEEL LTGLAVADRG DLLLLPKPTG  60
WEDGPADGVG GGGGEDSGEK LPGEVSAAEA EGGGGGGGAA ADSRPRFPRR PGEPDCTYYV  120
KFGSCRFGMK CKFNHPARKK KSRVKGSNGG SGSGSNSSSN KASSPDDEQA PKEEYGSYVP  180
DISVEADSLV FADKGSTSNS ENFKKKSYEI IDVKKVRVEP KELKVAKEKR KEFISEVSSQ  240
EECKYYSTPG GCKYGKSCKY LHRAGKEGKT DAEKVDLNFL GLPLRPGEKE CPYYMRTGSC  300
KYATNCKFHH PDPSNVGSKD PQLEHDNVDT PQQDVQGSSS QPNASIWPDQ RTVNEHHVPY  360
LAPSPSYGAG MLPPQGMYPP PEWNGYHQVP LNPYYPPGVP FQHFPAPINH PMYKPAEIPG  420
HQQAASEEYP ERPGQPECQY FVKSGFCKFR MKCKYHHPRS PVPLPAGALS PLGLPIKPDQ  480
PVCTYYGRYG VCKFGPACAY NHPFNFGPVP AAGPPLLPAQ YPTPGNYTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G17310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114980.0AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663936.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X2
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLJ3NCM30.0J3NCM3_ORYBR; Uncharacterized protein
STRINGOB12G17310.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.23e-63C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]