PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G18060.1
Common NameLOC102702988
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 448aa    MW: 48175.1 Da    PI: 8.2355
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G18060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.7e-116387327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  ++ C++++rtG C++G +CkF+H+p
  OB12G18060.1 63 EPDCSYYMRTGLCRFGMTCKFNHPP 87
                  789********************97 PP
2zf-CCCH38.81.6e-12108132327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C+++++tGtCk+G++CkF+H++
  OB12G18060.1 108 QPECQYYLKTGTCKFGATCKFHHPR 132
                   799********************96 PP
3zf-CCCH314.2e-10154178327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C +++rtG+Ck+ ++CkF+H++
  OB12G18060.1 154 EKECAYYLRTGQCKFASTCKFHHPQ 178
                   679********************97 PP
4zf-CCCH39.59.2e-13314339227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C+f+++tG Ck+G+ CkF+H++
  OB12G18060.1 314 DQPECQFYMKTGDCKFGAVCKFHHPK 339
                   689*********************96 PP
5zf-CCCH37.54e-12359385127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++ C f++r+G+Ck+G++CkF H++
  OB12G18060.1 359 PGEPVCTFYSRYGICKFGPNCKFDHPM 385
                   5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-56087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2816088IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-86387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-56488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-46686IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441105133IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6107134IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5111133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6150179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324151179IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4151178IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7154178IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511312340IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5315342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5318340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99358386IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7358385IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9360385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6362387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4363383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAAGAGAAGG GEGGASGTSP ASAAVIGPHH LGVAAAEEAM WQMTLGGGGE SMESVPYPER  60
IGEPDCSYYM RTGLCRFGMT CKFNHPPNRK LAVAAARMNG EYPYRVGQPE CQYYLKTGTC  120
KFGATCKFHH PREKAALATR VQLNVLGYPM RPNEKECAYY LRTGQCKFAS TCKFHHPQPS  180
NTMVSMRGSM YSPGQSATSP GQHTYPGTVT NWTLSRSASF IASPRWPGHS GYAQVIVPQG  240
LVQVPGWNPY AAQMGSSSPD DQQRTPVTTQ YYGSRQSETA GMGDHGMFQS YQGSSVPIGV  300
YTVQGENIFP ERPDQPECQF YMKTGDCKFG AVCKFHHPKE RLVPAPNCAL NSLGLPLRPG  360
EPVCTFYSRY GICKFGPNCK FDHPMGTLMY GSATSPTGDV SSLHYQLSPS PGHSGILLDG  420
GSGRSHRVPQ SDSQQIPSGD GNTEREAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G18060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115110.0AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663969.10.0PREDICTED: zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLJ3NCU80.0J3NCU8_ORYBR; Uncharacterized protein
STRINGOB12G18060.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-153zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]