PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB12G18970.1

Common Name

LOC102711311

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 214aa MW: 24172.1 Da PI: 4.478

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB12G18970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	65.6	1.4e-20	11	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiy....kvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 + GfrF+P+ +e+v++yL ++g++ ++ ++i+++d+y +veP +L +++++++ +fF+ ++ + +r +r++ +g+W a+ + OB12G18970.1 11 AIGFRFNPSPQEIVSYYLPLLIAGEQpEDTRDCIHHADVYgadmDVEPGRLAGrfapVARSTSSDRFFFTACRRVK---RRVSRIAGRGTWVAQST- 103 68*******************9994555677*9833334698435654445566889999999875...5999***9976. PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+++++ ++g kt+ f k+r ++ +dW+m+ey+ OB12G18970.1 104 TDVKNEEKVKIGELKTFKFKKERGRD-DYSDWLMEEYHC 141 7888889********9777766.89******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-20	8	159	IPR003441	NAC domain
PROSITE profile	PS51005	22.585	10	161	IPR003441	NAC domain
Pfam	PF02365	7.7E-14	12	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MASLSLDFLL AIGFRFNPSP QEIVSYYLPL LIAGEQPEDT RDCIHHADVY GADMDVEPGR 60 LAGRFAPVAR STSSDRFFFT ACRRVKRRVS RIAGRGTWVA QSTTDVKNEE KVKIGELKTF 120 KFKKERGRDD YSDWLMEEYH CHPGGEEAGD VEPVVCRIIR LDEFVRFVHD EPEAELLEES 180 LVDAILAPET QEEESSNPME GFVAPADGDE LLKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB12G18970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664527.1	1e-157	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	J3ND39	1e-156	J3ND39_ORYBR; Uncharacterized protein
STRING	OB12G18970.1	1e-157	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1832	27	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04400.1	6e-11	NAC domain containing protein 77

Link Out ? help Back to Top
Entrez Gene	102711311