PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G19390.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 293aa    MW: 31906 Da    PI: 6.1827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G19390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.7e-16128177255
           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   g++GV+++   grW+AeIrd       +  r ++g++ tae Aa+a++a + +++g
  OB12G19390.1 128 GFRGVHQRT-YGRWAAEIRDvI-----KgSRLWIGTYETAEAAARAYDAEASRIHG 177
                   89****999.8*********43.....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-9128177IPR001471AP2/ERF domain
SMARTSM003802.0E-27128191IPR001471AP2/ERF domain
PROSITE profilePS5103220.639128185IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-19128185IPR016177DNA-binding domain
PRINTSPR003671.5E-7129140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-25129185IPR001471AP2/ERF domain
PRINTSPR003671.5E-7151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MCVLCLPRQK IEAKMCRKRV DGDTHPATGR RPAVEAIGGR RRRRDEEELE EEEDEYMQFE  60
EEFLMFCARE EEKMAAASSL RSATAVTAKK PRLEKPTKDE EAASEKKSTG GRRIGGKARR  120
RPRKSKHGFR GVHQRTYGRW AAEIRDVIKG SRLWIGTYET AEAAARAYDA EASRIHGPDA  180
WTNFPPPPPP PPPPSTPPPP PPPPPPSPAV TSNTAEPAVA LPAAGEPAAA AKAPVPAVLA  240
RALEATNGWG FEPYSMGLLG SVSGMLAYGG YDDDDEPEEL MPPGDDGGCL WLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-13124185263ATERF1
3gcc_A3e-13124185263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123RRRPRK
2119125RRPRKSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G19390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698291.11e-168PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBLJ3ND810.0J3ND81_ORYBR; Uncharacterized protein
STRINGOB12G19390.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-10cytokinin response factor 2