PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G19870.1
Common NameLOC102723008
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 118aa    MW: 12806.4 Da    PI: 7.4455
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G19870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.62.6e-151284166
           NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.k.....kvkaeekewyfFskrdk 66
                  lppGfrF+Ptdeelvv+yL++++ +++l+ +  i++v+++ ++P+dL p +     +v+a+ + + fF+++d 
  OB12G19870.1 12 LPPGFRFRPTDEELVVHYLRRRALDTPLPPAIDIPDVRLLAHDPSDLlPpAvrgggAVTAGVRFIDFFARADA 84
                  79*************************999777*************963234444433334444456666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-16865IPR003441NAC domain
PROSITE profilePS5100514.84312118IPR003441NAC domain
PfamPF023651.2E-81383IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEAKECAARR ALPPGFRFRP TDEELVVHYL RRRALDTPLP PAIDIPDVRL LAHDPSDLLP  60
PAVRGGGAVT AGVRFIDFFA RADARGRRPA SPVSSSCVTD ASAEHCREQE TTSRGASD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G19870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126204e-49CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664550.11e-78PREDICTED: NAC domain-containing protein 68
TrEMBLJ3NDC92e-77J3NDC9_ORYBR; Uncharacterized protein
STRINGOB12G19870.14e-78(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.28e-14NAC domain containing protein 47