PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G20560.1
Common NameLOC102707267
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 145aa    MW: 15637.2 Da    PI: 11.1921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G20560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-082064755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  ++ r RR+ri  + +eL +l+P a    s+ +s ae+L+ A +Y+k Lq
  OB12G20560.1 20 AAARERRRRITGKTAELSRLIPGA----SRLNSTAEMLQAAARYVKLLQ 64
                  667899999**************9....677***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-101372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2681363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-81470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-71969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-62064IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKAAADQAGY GRRHQAVQSA AARERRRRIT GKTAELSRLI PGASRLNSTA EMLQAAARYV  60
KLLQAQVGVL ALMRSAGEAK KEVPSMAEER MHALLASGGA QERLAGEGMC LVPTKLVRAI  120
AGDKAIKSSL AVKRDLNRFM ESLEH
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G20560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8318084e-59AL831808.4 Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149684e-59AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX2558754e-59BX255875.3 Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126204e-59CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664569.11e-98PREDICTED: transcription factor bHLH52-like
TrEMBLJ3NDJ82e-97J3NDJ8_ORYBR; Uncharacterized protein
STRINGOB12G20560.14e-98(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-24bHLH family protein