PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G21400.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 332aa    MW: 36474.1 Da    PI: 7.9291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G21400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.31e-064364526
                  --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                  +C+ f ++  C++Gd C +aHg
  OB12G21400.1 43 PCPEFKKGAGCRRGDMCEYAHG 64
                  8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.8E-43865IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-44165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2584366IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.9257498IPR000571Zinc finger, CCCH-type
SMARTSM00356877497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MYSFKVRACS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFKKG AGCRRGDMCE  60
YAHGVFESWL HPAQYRTRLC KDGVGCARRV CFFAHTPEEL RPLYVSTGSA VPGKNLVPSN  120
LDDLFSAELA AASRSPRYAD QGGAAFSPTR KAAVLNQFQQ QQQSLLSPRA AAVAPEPVSP  180
MSSRLLAALA QREKMQQHTL RSMSSRDLAA GASLLVGSPV SSSMSKWGFP SGNPDWGADD  240
EELGRLKRCS SFELRSGANG SHEPDLSWVN TLVKEPTPEK PSVHRTTITT AAMDSIGILG  300
QTTSREHIVG EEDTAGVISS WLEQLQLDEM VV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G21400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698317.10.0PREDICTED: zinc finger CCCH domain-containing protein 67, partial
SwissprotQ2QPW21e-121C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLJ3NDT20.0J3NDT2_ORYBR; Uncharacterized protein
STRINGOB12G21400.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.17e-77CCCH-type zinc finger protein with ARM repeat domain