PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G24150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 736aa    MW: 80692.8 Da    PI: 4.8949
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G24150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.64.3e-163322756
       G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRla 56
                  AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  OB12G24150.1  3 ATPKQIRELMKVDGLTNDEVKSHLQKYRLH 32
                  9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-14335IPR009057Homeodomain-like
SuperFamilySSF466899.5E-6335IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-13332IPR006447Myb domain, plants
PfamPF106446.2E-26173288IPR019605Misato Segment II tubulin-like domain
CDDcd060605.40E-156173725No hitNo description
SuperFamilySSF524903.97E-31173244IPR003008Tubulin/FtsZ, GTPase domain
Gene3DG3DSA:3.40.50.14409.8E-18174252IPR003008Tubulin/FtsZ, GTPase domain
PfamPF148812.9E-22318500IPR029209DML1/Misato, tubulin domain
SuperFamilySSF524903.97E-31321500IPR003008Tubulin/FtsZ, GTPase domain
Gene3DG3DSA:3.40.50.14409.8E-18329501IPR003008Tubulin/FtsZ, GTPase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MAATPKQIRE LMKVDGLTND EVKSHLQKYR LHTRRASDGA SGCDNQMAGG HGHGLWPPPP  60
PSEQYTASQH STSQSGSPQG PLQLTVSVTA GDSCDGGDED DGRCNSTLSV TTEELRPVSV  120
QYSEFSLAPF FWRRLSTERS DPCQIHWIFL IATCGGCAWR CSCANESGSF YPFSVGGFAN  180
YVGSHFWNFQ DELLGLADDP DVDPVFRTAA LDMDVLYRTG ETHQGVPTYC PRLVSVGSRG  240
SLGSLSSSGN LSQTSAPADQ LDIITWSGNV TKSVSKPHGR NLFLQSLVEE GQNPSTSNGG  300
SNSQKSVEDK DLIECLENGV NFWTDYSKVQ YHPQSLYELH GSWTDFDKFD NYGSAQEVVL  360
DWSQIEEMNE RLRFFVEECD HIQGIQFIVD DSGGFSSVAA RFLENIADDY TNTPVLLYCV  420
RDPVTLGSSR NKRESITRSL HDAVSFAKLS SYCNLMVPIG PPSLSRSYLS PYLYIQDEKP  480
FHSSAVCAAA IHSVTVPFRL TRLGPSSNLA HSSGNLDIGE LVHILSDQGR LNMITALDVA  540
MPAPSLTDRD AMGNIEMKLQ SLTPEIRDED EDPYSVESLV IHGAIDRGGQ RTSISQVKDS  600
VCSVYEGRET RAKFSHLAVS MCPLPVPLPF PSIFRGNIGR HGEILGDNSE GTQPKGSIDI  660
ESVPMAARLR SSSAVLPFIE RRSGSLQKHG VARGSVGSQV LRDWGFGREE VQDMGEHLAK  720
LLRPFYPEMD LTSDSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G24150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734200.0AK073420.1 Oryza sativa Japonica Group cDNA clone:J033044H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698346.10.0PREDICTED: protein misato homolog 1, partial
TrEMBLJ3NEK70.0J3NEK7_ORYBR; Uncharacterized protein
STRINGOB12G24150.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.16e-18G2-like family protein