PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB12G24300.1

Common Name

LOC102712487

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 280aa MW: 31043.6 Da PI: 6.7624

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB12G24300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.9	6.4e-30	1	52	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OB12G24300.1 1 MRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 52 79*************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01557	4.2E-22	1	52	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.81E-14	1	52	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.1E-26	1	52	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-7	1	51	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MRWTTALHAH FVHAVELLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKGTDRSC 60 VAGHGHAREM GFLMRRGLVA EVDVFDGFNN NMVNTTSNNT TASRKSQSPG EQQQLQDLQN 120 GWPPHYIAAS ESDHLLMEQR LMQEIWKGAA ANDHHDQEEA AAAPPHHEHG RRRLDGQIVA 180 ERPPPPPSNT SSSSGDTMAS SLDWLLAPLP TRRQKNKYRN NNDDDGETAH HRDEAAAAMA 240 GGVKDPSLEM SLGRQGWQIT MEQCSSVESS SKELTLLKCL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-15	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-15	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-15	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-15	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-15	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-15	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-15	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-15	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-15	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-15	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-15	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-15	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB12G24300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100203	1e-120	FP100203.1 Phyllostachys edulis cDNA clone: bphylf053h02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664158.2	0.0	PREDICTED: uncharacterized protein LOC102712487
TrEMBL	J3NEM2	0.0	J3NEM2_ORYBR; Uncharacterized protein
STRING	OB12G24300.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	3e-32	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	102712487